STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI85701.1Putative stomatin/prohibitin-family membrane protease subunit YbbK. (362 aa)    
Predicted Functional Partners:
AGI85702.1
Hypothetical protein.
  
  
 0.792
AGI85015.1
S-adenosylhomocysteine deaminase; Methylthioadenosine deaminase.
      0.701
AGI84907.1
Hypothetical protein.
   
 0.549
AGI86097.1
FIG007959: peptidase, M16 family.
  
 0.549
AGI85908.1
Transport system permease protein.
  
 
 0.543
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.539
AGI85466.1
Hypothetical protein.
 
 
 0.538
AGI85828.1
Valyl-tRNA synthetase.
  
 
 0.532
pan
Proteasome-activating AAA-ATPase (PAN), archaeal; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone pr [...]
   
 
 0.501
AGI85796.1
Chaperone protein DnaK; Belongs to the heat shock protein 70 family.
  
 0.415
Your Current Organism:
Methanomethylophilus alvus
NCBI taxonomy Id: 1236689
Other names: C. Methanomethylophilus alvus Mx1201, Candidatus Methanomethylophilus alvus Mx1201, archaeon Mx1201
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