STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI86268.1tRNA S(4)U 4-thiouridine synthase (former ThiI). (287 aa)    
Predicted Functional Partners:
AGI85421.2
Cysteine desulfurase.
 
 0.971
AGI84925.1
ThiI.
  
  
  0.968
AGI85342.1
Sulfur carrier protein adenylyltransferase ThiF.
    
 0.906
AGI85341.1
Thiazole biosynthesis protein ThiG.
     
 0.900
AGI86269.1
Membrane protein.
       0.591
AGI86267.1
Glutamate synthase domain protein; Belongs to the glutamate synthase family.
       0.539
AGI86270.1
Hypothetical protein.
       0.536
Your Current Organism:
Methanomethylophilus alvus
NCBI taxonomy Id: 1236689
Other names: C. Methanomethylophilus alvus Mx1201, Candidatus Methanomethylophilus alvus Mx1201, archaeon Mx1201
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.