STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI86349.1[NiFe] hydrogenase nickel incorporation- associated protein HypB. (216 aa)    
Predicted Functional Partners:
hypA
Hydrogenase expression/formation protein (hypA); Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.886
AGI85882.1
[NiFe] hydrogenase metallocenter assembly protein HypD.
 
  
 0.838
AGI86173.1
[NiFe] hydrogenase metallocenter assembly protein HypC.
 
  
 0.769
AGI85512.1
Similar to uncharacterized ABC transporter ATP-binding protein MJ0121.
  
  
 0.683
AGI85514.1
Hypothetical protein.
  
    0.681
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
       0.671
AGI85226.1
[NiFe] hydrogenase metallocenter assembly protein HypF.
 
   
 0.647
AGI86333.1
[NiFe] hydrogenase metallocenter assembly protein HypE.
 
  
 0.630
truA
tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I); Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
       0.626
AGI86352.1
Putative DNA-binding protein (translin family).
       0.610
Your Current Organism:
Methanomethylophilus alvus
NCBI taxonomy Id: 1236689
Other names: C. Methanomethylophilus alvus Mx1201, Candidatus Methanomethylophilus alvus Mx1201, archaeon Mx1201
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