Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GAF06184.1 | GAF06320.1 | JCM16418_132 | JCM16418_271 | Hypothetical protein. | Hypothetical protein. | 0.689 |
GAF06184.1 | GAF07107.1 | JCM16418_132 | JCM16418_1096 | Hypothetical protein. | Hypothetical protein. | 0.763 |
GAF06184.1 | GAF08938.1 | JCM16418_132 | JCM16418_3049 | Hypothetical protein. | Hypothetical protein. | 0.733 |
GAF06320.1 | GAF06184.1 | JCM16418_271 | JCM16418_132 | Hypothetical protein. | Hypothetical protein. | 0.689 |
GAF06320.1 | GAF07107.1 | JCM16418_271 | JCM16418_1096 | Hypothetical protein. | Hypothetical protein. | 0.481 |
GAF06320.1 | GAF08938.1 | JCM16418_271 | JCM16418_3049 | Hypothetical protein. | Hypothetical protein. | 0.674 |
GAF07107.1 | GAF06184.1 | JCM16418_1096 | JCM16418_132 | Hypothetical protein. | Hypothetical protein. | 0.763 |
GAF07107.1 | GAF06320.1 | JCM16418_1096 | JCM16418_271 | Hypothetical protein. | Hypothetical protein. | 0.481 |
GAF07107.1 | GAF08938.1 | JCM16418_1096 | JCM16418_3049 | Hypothetical protein. | Hypothetical protein. | 0.767 |
GAF08935.1 | GAF08937.1 | JCM16418_3046 | JCM16418_3048 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Alkaline shock protein. | 0.770 |
GAF08935.1 | GAF08938.1 | JCM16418_3046 | JCM16418_3049 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Hypothetical protein. | 0.714 |
GAF08935.1 | GAF08939.1 | JCM16418_3046 | JCM16418_3050 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Hypothetical protein. | 0.680 |
GAF08935.1 | nusB | JCM16418_3046 | JCM16418_3051 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Transcription termination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.600 |
GAF08937.1 | GAF08935.1 | JCM16418_3048 | JCM16418_3046 | Alkaline shock protein. | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.770 |
GAF08937.1 | GAF08938.1 | JCM16418_3048 | JCM16418_3049 | Alkaline shock protein. | Hypothetical protein. | 0.867 |
GAF08937.1 | GAF08939.1 | JCM16418_3048 | JCM16418_3050 | Alkaline shock protein. | Hypothetical protein. | 0.778 |
GAF08937.1 | folD-2 | JCM16418_3048 | JCM16418_3052 | Alkaline shock protein. | Methylenetetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.477 |
GAF08937.1 | nusB | JCM16418_3048 | JCM16418_3051 | Alkaline shock protein. | Transcription termination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.707 |
GAF08937.1 | xseA | JCM16418_3048 | JCM16418_3053 | Alkaline shock protein. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.481 |
GAF08937.1 | xseB | JCM16418_3048 | JCM16418_3054 | Alkaline shock protein. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.481 |
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