STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAF09295.1RNA polymerase; Belongs to the sigma-70 factor family. ECF subfamily. (168 aa)    
Predicted Functional Partners:
GAF09296.1
ECF-type sigma factor negative effector.
       0.878
GAF09293.1
RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.572
GAF09294.1
Anti-sigma factor homolog YrhM.
  
   0.538
GAF10340.1
anti-sigma-W factor RsiW.
 
   0.524
rpoC
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.485
GAF07785.1
RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.463
GAF08298.1
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.445
GAF07465.1
Sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.444
GAF07198.1
Serine/threonine protein kinase PrkC.
  
 
 
 0.437
fliE
Flagellar hook-basal body complex protein FliE.
  
 
   0.431
Your Current Organism:
Paenibacillus pini
NCBI taxonomy Id: 1236976
Other names: P. pini JCM 16418, Paenibacillus pini JCM 16418, Paenibacillus pini S22, Paenibacillus sp. S22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.