STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAO31822.1lipid-A-disaccharide synthase; Belongs to the LpxB family. (84 aa)    
Predicted Functional Partners:
GAO28386.1
UDP-2,3-diacylglucosamine hydrolase.
 
  
 0.831
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
 
 0.818
GAO29090.1
acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
 
 0.814
GAO27998.1
acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
 
 0.814
GAO31821.1
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.803
GAO31820.1
Hypothetical protein.
       0.758
GAO28001.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
 
 0.756
surE
5-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
  
    0.732
GAO28000.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
  
 
 0.717
GAO28968.1
Hypothetical protein.
  
     0.712
Your Current Organism:
Geofilum rubicundum
NCBI taxonomy Id: 1236989
Other names: G. rubicundum JCM 15548, Geofilum rubicundum JAM-BA0501, Geofilum rubicundum JCM 15548, Rikenellaceae bacterium JAM-BA0501, Rikenellaceae bacterium NCIMB 14482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.