STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAO27948.1Aminoglycoside 6'-N-acetyltransferase. (177 aa)    
Predicted Functional Partners:
GAO28485.1
Pyruvate-flavodoxin oxidoreductase.
    
  0.854
GAO28223.1
Glutamate synthase.
   
 
 0.791
GAO27614.1
2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I beta.
    
  0.732
GAO31150.1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit.
    
  0.612
GAO31180.1
Acetoin dehydrogenase E1 component alpha-subunit.
    
  0.612
GAO28780.1
Acetoin dehydrogenase E1 component alpha-subunit.
    
  0.612
GAO28037.1
Ribonuclease III.
   
    0.514
GAO28038.1
Ribonuclease III.
   
    0.514
GAO29088.1
Carbamoyl-phosphate synthase small chain.
    
  0.502
GAO28592.1
ADP-ribose pyrophosphatase, mitochondrial precursor.
  
   0.405
Your Current Organism:
Geofilum rubicundum
NCBI taxonomy Id: 1236989
Other names: G. rubicundum JCM 15548, Geofilum rubicundum JAM-BA0501, Geofilum rubicundum JCM 15548, Rikenellaceae bacterium JAM-BA0501, Rikenellaceae bacterium NCIMB 14482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.