STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C900_05428RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)    
Predicted Functional Partners:
C900_05427
Hypothetical protein.
 
     0.948
C900_05429
Hypothetical protein.
 
     0.886
C900_05431
Hypothetical protein.
 
    0.850
C900_05430
Hypothetical protein.
 
     0.840
C900_03216
Hypothetical protein.
  
 
   0.806
C900_03839
Sigma-70 region 2 domain protein.
  
     0.679
C900_01762
Hypothetical protein.
  
    0.671
C900_05771
Hypothetical protein.
  
    0.655
C900_03210
Tetratricopeptide repeat domain protein; Overlaps another CDS with the same product name.
  
    0.640
C900_02237
Hypothetical protein.
  
     0.561
Your Current Organism:
Fulvivirga imtechensis
NCBI taxonomy Id: 1237149
Other names: F. imtechensis AK7, Fulvivirga imtechensis AK7, Fulvivirga sp. AK7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.