STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMA41160.1Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)    
Predicted Functional Partners:
AMA42377.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.756
AMA41176.1
Na+:H+ dicarboxylate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
 
 
 0.561
AMA41159.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
AMA41040.1
Aromatic amino acid transport family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.502
AMA41242.1
Acetylneuraminate ABC transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      
 0.471
AMA41730.1
Proline:sodium symporter PutP; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
      
 0.471
AMA43418.1
General substrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
AMA42273.1
Calcium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.468
AMA43790.1
Sodium:dicarboxylate symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
      
 0.468
AWJ11_07985
Cell filamentation protein Fic; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.414
Your Current Organism:
Piscirickettsia salmonis
NCBI taxonomy Id: 1238
Other names: P. salmonis, strain LF-89
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.