AMA43740.1 protein (Piscirickettsia salmonis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMA43740.1

Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)

Predicted Functional Partners:

AMA43805.1

0.601

AMA42985.1

0.455

AMA41551.1

0.439

fadE

0.414

AMA43293.1

0.408

Your Current Organism:

Piscirickettsia salmonis

NCBI taxonomy Id: 1238
Other names: P. salmonis, strain LF-89

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMA41551.1	AMA42985.1	AWJ11_03435	AWJ11_11880	2Fe-2S iron-sulfur cluster-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.633
AMA41551.1	AMA43740.1	AWJ11_03435	AWJ11_04040	2Fe-2S iron-sulfur cluster-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AMA41551.1	AMA43805.1	AWJ11_03435	AWJ11_09140	2Fe-2S iron-sulfur cluster-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AMA41551.1	fadE	AWJ11_03435	AWJ11_09130	2Fe-2S iron-sulfur cluster-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AMA42985.1	AMA41551.1	AWJ11_11880	AWJ11_03435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2Fe-2S iron-sulfur cluster-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
AMA42985.1	AMA43740.1	AWJ11_11880	AWJ11_04040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AMA42985.1	AMA43805.1	AWJ11_11880	AWJ11_09140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AMA42985.1	fadE	AWJ11_11880	AWJ11_09130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acyl-CoA dehydrogenase; Functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624
AMA43293.1	AMA43740.1	AWJ11_13625	AWJ11_04040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AMA43740.1	AMA41551.1	AWJ11_04040	AWJ11_03435	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2Fe-2S iron-sulfur cluster-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
AMA43740.1	AMA42985.1	AWJ11_04040	AWJ11_11880	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.455
AMA43740.1	AMA43293.1	AWJ11_04040	AWJ11_13625	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AMA43740.1	AMA43805.1	AWJ11_04040	AWJ11_09140	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
AMA43740.1	fadE	AWJ11_04040	AWJ11_09130	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AMA43805.1	AMA41551.1	AWJ11_09140	AWJ11_03435	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2Fe-2S iron-sulfur cluster-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
AMA43805.1	AMA42985.1	AWJ11_09140	AWJ11_11880	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.769
AMA43805.1	AMA43740.1	AWJ11_09140	AWJ11_04040	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
AMA43805.1	fadE	AWJ11_09140	AWJ11_09130	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
fadE	AMA41551.1	AWJ11_09130	AWJ11_03435	acyl-CoA dehydrogenase; Functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	2Fe-2S iron-sulfur cluster-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
fadE	AMA42985.1	AWJ11_09130	AWJ11_11880	acyl-CoA dehydrogenase; Functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.624