AMA41768.1 protein (Piscirickettsia salmonis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMA41768.1

glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)

Predicted Functional Partners:

rpsU

0.974

dnaG

0.651

rpsO

0.546

rpoD

0.512

tsaD

0.482

rpmE

0.459

Your Current Organism:

Piscirickettsia salmonis

NCBI taxonomy Id: 1238
Other names: P. salmonis, strain LF-89

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMA41768.1	dnaG	AWJ11_04790	AWJ11_04785	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.651
AMA41768.1	rpmE	AWJ11_04790	AWJ11_14765	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; Binds the 23S rRNA.	0.459
AMA41768.1	rpoD	AWJ11_04790	AWJ11_04780	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.512
AMA41768.1	rpsO	AWJ11_04790	AWJ11_14570	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.546
AMA41768.1	rpsU	AWJ11_04790	AWJ11_04795	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S21; A small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.974
AMA41768.1	tsaD	AWJ11_04790	AWJ11_04800	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.482
dnaG	AMA41768.1	AWJ11_04785	AWJ11_04790	Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
dnaG	rpoD	AWJ11_04785	AWJ11_04780	Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.964
dnaG	rpsU	AWJ11_04785	AWJ11_04795	Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	30S ribosomal protein S21; A small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.745
dnaG	tsaD	AWJ11_04785	AWJ11_04800	Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.720
rpmE	AMA41768.1	AWJ11_14765	AWJ11_04790	50S ribosomal protein L31; Binds the 23S rRNA.	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
rpmE	rpsO	AWJ11_14765	AWJ11_14570	50S ribosomal protein L31; Binds the 23S rRNA.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.988
rpmE	rpsU	AWJ11_14765	AWJ11_04795	50S ribosomal protein L31; Binds the 23S rRNA.	30S ribosomal protein S21; A small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.964
rpoD	AMA41768.1	AWJ11_04780	AWJ11_04790	RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
rpoD	dnaG	AWJ11_04780	AWJ11_04785	RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.964
rpoD	rpsO	AWJ11_04780	AWJ11_14570	RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.407
rpoD	rpsU	AWJ11_04780	AWJ11_04795	RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	30S ribosomal protein S21; A small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.604
rpoD	tsaD	AWJ11_04780	AWJ11_04800	RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	tRNA N6-adenosine(37)-threonylcarbamoyltransferase complex transferase subunit TsaD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.510
rpsO	AMA41768.1	AWJ11_14570	AWJ11_04790	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
rpsO	rpmE	AWJ11_14570	AWJ11_14765	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	50S ribosomal protein L31; Binds the 23S rRNA.	0.988