node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMA41235.1 | AMA42012.1 | AWJ11_01575 | AWJ11_06230 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.933 |
AMA41235.1 | AMA42645.1 | AWJ11_01575 | AWJ11_09925 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.783 |
AMA41235.1 | AMA43686.1 | AWJ11_01575 | AWJ11_15885 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.997 |
AMA41235.1 | mutL | AWJ11_01575 | AWJ11_06605 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | Endonuclease/exonuclease/phosphatase; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.469 |
AMA41235.1 | polA | AWJ11_01575 | AWJ11_15710 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.922 |
AMA41235.1 | recA | AWJ11_01575 | AWJ11_06825 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.722 |
AMA41235.1 | rnhB | AWJ11_01575 | AWJ11_03720 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.556 |
AMA41235.1 | topA | AWJ11_01575 | AWJ11_15575 | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.714 |
AMA42012.1 | AMA41235.1 | AWJ11_06230 | AWJ11_01575 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.933 |
AMA42012.1 | AMA42645.1 | AWJ11_06230 | AWJ11_09925 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.891 |
AMA42012.1 | AMA43686.1 | AWJ11_06230 | AWJ11_15885 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.970 |
AMA42012.1 | mutL | AWJ11_06230 | AWJ11_06605 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Endonuclease/exonuclease/phosphatase; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.947 |
AMA42012.1 | mutS | AWJ11_06230 | AWJ11_06815 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.946 |
AMA42012.1 | polA | AWJ11_06230 | AWJ11_15710 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.982 |
AMA42012.1 | priB | AWJ11_06230 | AWJ11_08265 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.867 |
AMA42012.1 | recA | AWJ11_06230 | AWJ11_06825 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.921 |
AMA42012.1 | rnhB | AWJ11_06230 | AWJ11_03720 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.895 |
AMA42012.1 | topA | AWJ11_06230 | AWJ11_15575 | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.942 |
AMA42645.1 | AMA41235.1 | AWJ11_09925 | AWJ11_01575 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.783 |
AMA42645.1 | AMA42012.1 | AWJ11_09925 | AWJ11_06230 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5'-3' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.891 |