STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMA42086.1DNA starvation/stationary phase protection protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family. (154 aa)    
Predicted Functional Partners:
clpS
Cold-shock protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.786
AMA42439.1
NAD(P)H-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WrbA family.
  
  
 0.680
AMA43523.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.593
ahpC
Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.575
AMA43607.1
Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.575
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.570
prkA
Serine protein kinase PrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.563
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
      
 0.546
AMA42496.1
Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.536
AMA43033.1
Ribosomal protein L11 methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.536
Your Current Organism:
Piscirickettsia salmonis
NCBI taxonomy Id: 1238
Other names: P. salmonis, strain LF-89
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.