STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icmG-2Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (326 aa)    
Predicted Functional Partners:
icmK-2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.871
icmE-2
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.863
dotC-2
Type IV secretion system protein DotC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.751
dotD-2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.747
icmC-2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
AMA43174.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.716
dotB-2
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.579
icmT-2
Phosphoesterase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.549
icmK
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.455
icmK-3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.455
Your Current Organism:
Piscirickettsia salmonis
NCBI taxonomy Id: 1238
Other names: P. salmonis, strain LF-89
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.