STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_0150Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
C882_1530
Hydrogen peroxidase; Belongs to the LysR transcriptional regulatory family.
  
   
 0.716
C882_1148
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.715
C882_3587
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.707
C882_3046
Glutamate synthase [NADPH] large chain.
     
 0.545
C882_0151
Permease of the drug/metabolite transporter (DMT) superfamily.
  
    0.540
cbbL
Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.514
C882_1756
Hydrogen peroxidase; Belongs to the LysR transcriptional regulatory family.
  
     0.462
C882_0152
Flavoprotein wrbA.
       0.459
C882_0148
Ribulose bisphosphate carboxylase small chain.
     
 0.440
C882_0270
Malonyl CoA-acyl carrier protein transacylase.
     
 0.425
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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