STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_0336Long-chain-fatty-acid--CoA ligase. (504 aa)    
Predicted Functional Partners:
C882_0270
Malonyl CoA-acyl carrier protein transacylase.
 
 0.999
C882_0273
Long-chain-fatty-acid--CoA ligase.
  
0.997
C882_0269
Malonyl CoA-acyl carrier protein transacylase.
  
0.980
C882_2271
Putative cytochrome P450 hydroxylase.
 0.890
C882_0601
LSU ribosomal protein L6p (L9e); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
    
  0.872
C882_1542
Hypothetical protein.
  
 0.855
C882_4103
Enoyl-CoA hydratase.
  
 0.855
C882_0341
Malonyl-CoA decarboxylase.
  
 0.803
C882_4561
Malonyl CoA-acyl carrier protein transacylase.
   
 0.782
C882_0337
Regulatory protein GntR.
       0.773
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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