STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_0525Putative hypoxanthine oxidase XdhD. (913 aa)    
Predicted Functional Partners:
C882_0526
Xanthine dehydrogenase.
 0.999
C882_3507
Carbon monoxide dehydrogenase medium chain.
 
 0.999
C882_0524
Hypothetical protein.
  
  0.992
C882_3505
Carbon monoxide dehydrogenase small chain.
 
0.982
C882_3500
Isoquinoline 1-oxidoreductase alpha subunit.
 
0.973
C882_1658
Aerobic-type carbon monoxide dehydrogenase.
 
0.962
C882_3501
Isoquinoline 1-oxidoreductase beta subunit.
 
0.961
C882_3506
Carbon-monoxide dehydrogenase form II, large subunit.
 
0.961
C882_0523
Hypothetical protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
     0.959
C882_3510
Carbon monoxide dehydrogenase F protein.
 
 
 0.956
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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