STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_0722Transcriptional regulator, Crp/Fnr family. (244 aa)    
Predicted Functional Partners:
C882_3046
Glutamate synthase [NADPH] large chain.
    
 0.863
C882_0778
PTPS-like type 4.
    
  0.827
C882_1360
Hypothetical protein.
   
 0.779
C882_0724
Putative sulfonate/nitrate transport system substrate-binding protein.
  
    0.775
C882_0723
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
       0.773
C882_0936
cAMP-binding protein.
  
  
 0.724
C882_0269
Malonyl CoA-acyl carrier protein transacylase.
  
 0.721
C882_0270
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.702
C882_1953
Putative transcriptional regulator, Crp/Fnr family.
  
     0.691
C882_4434
Hypothetical protein.
   
 0.660
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.