STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_1571Polysaccharide deacetylase. (323 aa)    
Predicted Functional Partners:
C882_1572
AAA ATPase.
 
     0.952
C882_1570
Hypothetical protein.
 
   
 0.928
C882_1573
Hypothetical protein.
 
     0.895
C882_1581
Esterase.
 
 
 0.874
C882_1574
Polysaccharide export protein.
 
   
 0.867
C882_0885
5-Hydroxyisourate Hydrolase (HIUase).
  
 
  0.862
C882_1566
Hypothetical protein.
 
   
 0.856
C882_1567
HPr kinase.
 
     0.851
C882_1575
Lipopolysaccharide biosynthesis chain length determinant protein.
 
   
 0.850
C882_1576
Protein-tyrosine kinase.
 
   
 0.847
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.