STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_1682Geranylgeranyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. (289 aa)    
Predicted Functional Partners:
C882_1681
Hydroxyneurosporene methyltransferase.
 
 0.977
C882_1707
Geranylgeranyl diphosphate reductase.
 
 0.937
C882_1684
Hydroxyneurosporene dehydrogenase.
 
  
 0.929
C882_1680
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase BchC.
 
 
 0.923
C882_1705
Chlorophyll a synthase ChlG.
 
 
 0.921
C882_1677
Chlorophyllide reductase subunit BchZ.
 
  
 0.912
C882_1678
Chlorophyllide reductase subunit BchY.
 
     0.897
C882_1671
Phytoene synthase.
 
 0.867
C882_1675
Light-harvesting LHI, alpha subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
   
 0.866
C882_4159
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.865
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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