STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_3403Short-chain dehydrogenase/reductase SDR. (233 aa)    
Predicted Functional Partners:
C882_0270
Malonyl CoA-acyl carrier protein transacylase.
  
 0.980
C882_0273
Long-chain-fatty-acid--CoA ligase.
  
 0.955
C882_0269
Malonyl CoA-acyl carrier protein transacylase.
  
 0.950
C882_2271
Putative cytochrome P450 hydroxylase.
  
 0.868
C882_3046
Glutamate synthase [NADPH] large chain.
     
 0.830
C882_4046
Phenylacetate-CoA oxygenase/reductase, PaaK subunit.
   
 0.752
C882_1962
Sarcosine oxidase alpha subunit; Belongs to the GcvT family.
  
 0.689
C882_1542
Hypothetical protein.
  
 0.682
C882_4103
Enoyl-CoA hydratase.
  
 0.682
C882_3402
Hypothetical protein.
    
 0.674
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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