STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_4144Competence protein. (738 aa)    
Predicted Functional Partners:
C882_1505
Rossmann fold nucleotide-binding protein Smf.
 
  
 0.926
C882_1746
Phosphoribosyltransferase protein.
 
  
 0.914
C882_1360
Hypothetical protein.
  
    0.873
C882_4434
Hypothetical protein.
  
    0.837
C882_2157
ComM-related protein.
 
  
 0.802
C882_1742
DNA repair protein RadC; Belongs to the UPF0758 family.
 
  
 0.787
C882_0836
Serine phosphatase RsbU.
  
    0.785
gltX-2
Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
 
     0.711
C882_3319
Type IV fimbrial assembly protein PilC.
   
  
 0.683
C882_1807
Single-stranded-DNA-specific exonuclease RecJ.
 
   
 0.663
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.