STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_4319Transcriptional regulator, IclR family. (264 aa)    
Predicted Functional Partners:
C882_0270
Malonyl CoA-acyl carrier protein transacylase.
  
 0.800
C882_0714
Allophanate hydrolase 2 subunit 1.
  
    0.795
C882_0715
Allophanate hydrolase 2 subunit 2.
  
    0.777
C882_1309
Transcriptional regulator, IclR family.
  
     0.772
C882_2269
Transcriptional regulator, IclR family.
  
     0.683
C882_4213
2-oxoglutarate oxidoreductase, alpha subunit.
 
  
  0.669
hutH
Histidine ammonia-lyase.
    
 0.659
hutI
Imidazolonepropionase.
    
 0.653
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
    
 0.636
C882_3640
Homogentisate 1,2-dioxygenase.
    
 0.636
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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