STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C882_4404Putative cytoplasmic protein. (255 aa)    
Predicted Functional Partners:
C882_2271
Putative cytochrome P450 hydroxylase.
     
 0.899
C882_4046
Phenylacetate-CoA oxygenase/reductase, PaaK subunit.
     
 0.800
C882_1866
Pirin-related protein; Belongs to the pirin family.
 
  
 0.766
C882_3441
Pirin; Belongs to the pirin family.
 
  
 0.754
C882_3915
Ferredoxin--NADP(+) reductase.
  
  
 0.713
C882_1146
Isomerase.
  
  
 0.707
C882_0314
2-polyprenyl-6-methoxyphenol hydroxylase.
  
 
 0.696
C882_2064
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase.
  
 
 0.696
C882_4057
2-polyprenyl-6-methoxyphenol hydroxylase.
  
 
 0.696
C882_4552
L-alanine-DL-glutamate epimerase.
     
 0.654
Your Current Organism:
Caenispirillum salinarum
NCBI taxonomy Id: 1238182
Other names: C. salinarum AK4, Caenispirillum salinarum AK4, Caenispirillum salinarum JCM 17360, Caenispirillum salinarum MTCC 10963, Caenispirillum sp. AK4
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