STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERG98297.1Choline/carnitine/betaine transport. (584 aa)    
Predicted Functional Partners:
ERG99914.1
Choline dehydrogenase related flavoprotein.
  
 
 0.537
ERG98298.1
Hypothetical protein.
       0.497
ERH00273.1
ABC-type dipeptide transport system, periplasmic component.
 
  
  0.477
ERG99047.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
    
  0.421
ERH00275.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
    
  0.421
ERG98612.1
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
    
  0.421
ERG98945.1
Di- and tricarboxylate transporter.
 
   
 0.406
ERG99045.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
  
 
  0.404
ERH00274.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
  
 
  0.404
ERG97536.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
  
 
  0.404
Your Current Organism:
Haloquadratum sp. J07HQX50
NCBI taxonomy Id: 1238426
Other names: H. sp. J07HQX50
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.