STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps4Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (174 aa)    
Predicted Functional Partners:
rpl37ae
Ribosomal protein L37AE/L43A; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL43 family.
   
   0.999
ERG99516.1
Translation initiation factor 2, alpha subunit (eIF-2alpha).
   
  0.999
ERG99517.1
Ribosomal protein L44E; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 
 0.999
rnp3
RNase P/RNase MRP subunit p30; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family.
   
  0.999
ERG99653.1
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain protein.
  
  0.999
rpl15e
Ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 
 0.999
rps24e
Ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.999
rpl10e
Ribosomal protein L16/L10E; Belongs to the universal ribosomal protein uL16 family.
 
 
 0.999
ERG98087.1
Ribosomal protein S15P/S13E; Belongs to the universal ribosomal protein uS15 family.
 
 0.999
ERG98089.1
Ribosomal protein S3AE.
   
 0.999
Your Current Organism:
Haloquadratum sp. J07HQX50
NCBI taxonomy Id: 1238426
Other names: H. sp. J07HQX50
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.