Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ERG97627.1 | ERG98597.1 | J07HQX50_01655 | J07HQX50_02638 | Superfamily II DNA/RNA helicase, SNF2 family. | RecA/RadA recombinase. | 0.737 |
ERG97627.1 | ERG98684.1 | J07HQX50_01655 | J07HQX50_02729 | Superfamily II DNA/RNA helicase, SNF2 family. | Hypothetical protein. | 0.606 |
ERG97627.1 | ERG98983.1 | J07HQX50_01655 | J07HQX50_00125 | Superfamily II DNA/RNA helicase, SNF2 family. | DNA repair exonuclease. | 0.693 |
ERG97627.1 | ERG99261.1 | J07HQX50_01655 | J07HQX50_00404 | Superfamily II DNA/RNA helicase, SNF2 family. | Replication factor A. | 0.606 |
ERG97627.1 | fen | J07HQX50_01655 | J07HQX50_00419 | Superfamily II DNA/RNA helicase, SNF2 family. | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.997 |
ERG97627.1 | pcn | J07HQX50_01655 | J07HQX50_02810 | Superfamily II DNA/RNA helicase, SNF2 family. | PCNA-like DNA polymerase sliding clamp subunit protein; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.976 |
ERG98597.1 | ERG97627.1 | J07HQX50_02638 | J07HQX50_01655 | RecA/RadA recombinase. | Superfamily II DNA/RNA helicase, SNF2 family. | 0.737 |
ERG98597.1 | ERG98684.1 | J07HQX50_02638 | J07HQX50_02729 | RecA/RadA recombinase. | Hypothetical protein. | 0.660 |
ERG98597.1 | ERG98983.1 | J07HQX50_02638 | J07HQX50_00125 | RecA/RadA recombinase. | DNA repair exonuclease. | 0.675 |
ERG98597.1 | ERG99261.1 | J07HQX50_02638 | J07HQX50_00404 | RecA/RadA recombinase. | Replication factor A. | 0.737 |
ERG98597.1 | ERG99337.1 | J07HQX50_02638 | J07HQX50_00481 | RecA/RadA recombinase. | NADH:ubiquinone oxidoreductase 49 kD subunit 7. | 0.662 |
ERG98597.1 | ERG99660.1 | J07HQX50_02638 | J07HQX50_00807 | RecA/RadA recombinase. | DNA mismatch repair enzyme (putative ATPase). | 0.706 |
ERG98597.1 | ERG99661.1 | J07HQX50_02638 | J07HQX50_00808 | RecA/RadA recombinase. | DNA mismatch repair enzyme (putative ATPase). | 0.706 |
ERG98597.1 | fen | J07HQX50_02638 | J07HQX50_00419 | RecA/RadA recombinase. | Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...] | 0.808 |
ERG98597.1 | mptD | J07HQX50_02638 | J07HQX50_00828 | RecA/RadA recombinase. | Uncharacterized protein conserved in archaea; Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD); Belongs to the archaeal dihydroneopterin aldolase family. | 0.709 |
ERG98597.1 | pcn | J07HQX50_02638 | J07HQX50_02810 | RecA/RadA recombinase. | PCNA-like DNA polymerase sliding clamp subunit protein; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.787 |
ERG98684.1 | ERG97627.1 | J07HQX50_02729 | J07HQX50_01655 | Hypothetical protein. | Superfamily II DNA/RNA helicase, SNF2 family. | 0.606 |
ERG98684.1 | ERG98597.1 | J07HQX50_02729 | J07HQX50_02638 | Hypothetical protein. | RecA/RadA recombinase. | 0.660 |
ERG98684.1 | ERG98983.1 | J07HQX50_02729 | J07HQX50_00125 | Hypothetical protein. | DNA repair exonuclease. | 0.878 |
ERG98684.1 | ERG99261.1 | J07HQX50_02729 | J07HQX50_00404 | Hypothetical protein. | Replication factor A. | 0.717 |
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