Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ERG98089.1 | ERG98396.1 | J07HQX50_02121 | J07HQX50_02435 | Ribosomal protein S3AE. | 60s Acidic ribosomal protein. | 0.999 |
ERG98089.1 | ERG98397.1 | J07HQX50_02121 | J07HQX50_02436 | Ribosomal protein S3AE. | Ribosomal protein L10. | 0.999 |
ERG98089.1 | ERG98630.1 | J07HQX50_02121 | J07HQX50_02673 | Ribosomal protein S3AE. | Translation elongation factor EF-1alpha (GTPase). | 0.990 |
ERG98089.1 | ef1b | J07HQX50_02121 | J07HQX50_02433 | Ribosomal protein S3AE. | Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. | 0.977 |
ERG98089.1 | fusA | J07HQX50_02121 | J07HQX50_02675 | Ribosomal protein S3AE. | Translation elongation factor aEF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...] | 0.999 |
ERG98089.1 | pelA | J07HQX50_02121 | J07HQX50_00333 | Ribosomal protein S3AE. | Putative translation factor pelota; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity. | 0.955 |
ERG98089.1 | prf1 | J07HQX50_02121 | J07HQX50_02705 | Ribosomal protein S3AE. | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. | 0.766 |
ERG98089.1 | rpl1 | J07HQX50_02121 | J07HQX50_02437 | Ribosomal protein S3AE. | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | 0.999 |
ERG98089.1 | rps10-2 | J07HQX50_02121 | J07HQX50_02672 | Ribosomal protein S3AE. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
ERG98089.1 | rps3 | J07HQX50_02121 | J07HQX50_02454 | Ribosomal protein S3AE. | Ribosomal protein S3, eukaryotic/archaeal type; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. | 0.999 |
ERG98396.1 | ERG98089.1 | J07HQX50_02435 | J07HQX50_02121 | 60s Acidic ribosomal protein. | Ribosomal protein S3AE. | 0.999 |
ERG98396.1 | ERG98397.1 | J07HQX50_02435 | J07HQX50_02436 | 60s Acidic ribosomal protein. | Ribosomal protein L10. | 0.999 |
ERG98396.1 | ERG98630.1 | J07HQX50_02435 | J07HQX50_02673 | 60s Acidic ribosomal protein. | Translation elongation factor EF-1alpha (GTPase). | 0.951 |
ERG98396.1 | ef1b | J07HQX50_02435 | J07HQX50_02433 | 60s Acidic ribosomal protein. | Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. | 0.980 |
ERG98396.1 | fusA | J07HQX50_02435 | J07HQX50_02675 | 60s Acidic ribosomal protein. | Translation elongation factor aEF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...] | 0.951 |
ERG98396.1 | pelA | J07HQX50_02435 | J07HQX50_00333 | 60s Acidic ribosomal protein. | Putative translation factor pelota; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity. | 0.688 |
ERG98396.1 | rpl1 | J07HQX50_02435 | J07HQX50_02437 | 60s Acidic ribosomal protein. | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. | 0.999 |
ERG98396.1 | rps10-2 | J07HQX50_02435 | J07HQX50_02672 | 60s Acidic ribosomal protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.972 |
ERG98396.1 | rps3 | J07HQX50_02435 | J07HQX50_02454 | 60s Acidic ribosomal protein. | Ribosomal protein S3, eukaryotic/archaeal type; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. | 0.999 |
ERG98397.1 | ERG98089.1 | J07HQX50_02436 | J07HQX50_02121 | Ribosomal protein L10. | Ribosomal protein S3AE. | 0.999 |
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