STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D081_2261Diguanylate cyclase. (586 aa)    
Predicted Functional Partners:
D081_2001
Sensory box/GGDEF family protein.
 
 0.951
D081_1290
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 0.936
D081_0427
Hypothetical protein.
  
 0.902
D081_1428
Sensory box/GGDEF family protein.
 
0.897
D081_1411
DNA-binding response regulator, AraC family.
 
 
0.876
D081_2188
Sensory box histidine kinase/response regulator.
 0.872
D081_1408
Sensory box protein.
 
  0.868
D081_2000
Sensory box/GGDEF family protein.
 
 
  0.867
D081_0827
Response regulator.
 
 
 0.862
D081_2037
Signal transduction histidine kinase.
 
 
 0.827
Your Current Organism:
Anaerovibrio sp. JC8
NCBI taxonomy Id: 1240085
Other names: A. sp. JC8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.