STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ISGA_816ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
ISGA_534
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
ISGA_820
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.990
ISGA_533
Urea ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
 0.988
ISGA_815
Amino acid ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.988
ISGA_535
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.955
ISGA_531
Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.939
ISGA_814
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.644
ISGA_05855
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.605
ISGA_5320
Branched-chain amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.591
ISGA_532
Urea ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.562
Your Current Organism:
Gordonia sp. NB41Y
NCBI taxonomy Id: 1241906
Other names: G. sp. NB4-1Y, Gordonia sp. NB4-1Y
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