STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY82465.1Hypothetical protein. (60 aa)    
Predicted Functional Partners:
SDY58705.1
Pilus assembly protein CpaB.
 
  
 0.664
SDY59033.1
Prepilin peptidase CpaA.
 
  
 0.659
SDZ53070.1
LuxR family transcriptional regulator.
 
    0.615
SDZ35592.1
Hypothetical protein.
  
     0.610
SDY58820.1
Pilus assembly protein CpaE.
 
  
 0.555
SDZ56027.1
SH3 domain-containing protein.
  
     0.546
SDZ60416.1
Hypothetical protein.
  
     0.538
SDY80072.1
Beta-barrel assembly machine subunit BamF.
  
     0.526
SDY82507.1
Uncharacterized conserved protein, contains Mth938-like domain.
       0.525
SDZ53055.1
N-acyl-L-homoserine lactone synthetase; Belongs to the autoinducer synthase family.
  
     0.523
Your Current Organism:
Jannaschia faecimaris
NCBI taxonomy Id: 1244108
Other names: CCUG 63415, DSM 100420, J. faecimaris, Jannaschia faecimaris Jung and Yoon 2014, Jannaschia sp. HD-22, KCTC 32179, strain HD-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.