STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY92941.1Carboxypeptidase Taq Metallo peptidase. MEROPS family M32; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. (490 aa)    
Predicted Functional Partners:
ctaA
Cytochrome c oxidase assembly protein subunit 15; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
  
    0.869
SDY92888.1
tRNA/rRNA methyltransferase.
       0.798
SDY92860.1
Thiamine-phosphate pyrophosphorylase.
 
     0.671
SDY92972.1
Uncharacterized conserved protein, DUF1330 family.
       0.565
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
  
 0.423
SDY91331.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
      
 0.422
Your Current Organism:
Jannaschia faecimaris
NCBI taxonomy Id: 1244108
Other names: CCUG 63415, DSM 100420, J. faecimaris, Jannaschia faecimaris Jung and Yoon 2014, Jannaschia sp. HD-22, KCTC 32179, strain HD-22
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