STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EME70736.1COG0520 Selenocysteine lyase. (400 aa)    
Predicted Functional Partners:
EME70737.1
COG0822 NifU homolog involved in Fe-S cluster formation.
 
 0.993
EME69021.1
Scaffold protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 0.957
EME68115.1
NifQ protein.
  
 0.954
EME68274.1
COG0492 Thioredoxin reductase.
 
 
 0.893
EME70735.1
Purine catabolism protein pucB; COG2068 Uncharacterized MobA-related protein.
    
  0.877
EME68918.1
COG0492 Thioredoxin reductase.
  
 
 0.857
EME70733.1
COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; overlaps another CDS with the same product name.
  
  
 0.805
EME70734.1
COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; overlaps another CDS with the same product name.
       0.782
EME69689.1
Hypothetical protein; COG0303 Molybdopterin biosynthesis enzyme.
  
 
 0.741
EME69271.1
Molybdenum cofactor biosynthesis protein; COG0303 Molybdopterin biosynthesis enzyme.
  
 
 0.741
Your Current Organism:
Magnetospirillum caucaseum
NCBI taxonomy Id: 1244869
Other names: DSM 28995, M. caucaseum, Magnetospirillum caucaseum Dziuba et al. 2016, Magnetospirillum sp. SO-1, VKM B-2936, strain SO-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.