STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EME68348.1COG1309 Transcriptional regulator. (202 aa)    
Predicted Functional Partners:
EME68350.1
COG0714 MoxR-like ATPases.
     
 0.606
EME68349.1
COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily.
       0.595
EME69375.1
Phenolpthiocerol synthesis polyketide synthase ppsA; COG3321 Polyketide synthase modules and related proteins.
    
 0.590
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.485
EME68347.1
COG0840 Methyl-accepting chemotaxis protein.
   
   0.482
EME68352.1
COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
       0.444
EME68262.1
COG0469 Pyruvate kinase; chloroplast; Belongs to the pyruvate kinase family.
    
 0.443
EME68351.1
COG3816 Uncharacterized protein conserved in bacteria.
       0.434
EME68653.1
PAS/PAC sensor hybrid histidine kinase; COG0642 Signal transduction histidine kinase.
    
 
 0.431
EME68125.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
  0.424
Your Current Organism:
Magnetospirillum caucaseum
NCBI taxonomy Id: 1244869
Other names: DSM 28995, M. caucaseum, Magnetospirillum caucaseum Dziuba et al. 2016, Magnetospirillum sp. SO-1, VKM B-2936, strain SO-1
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