STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EME68166.1COG0848 Biopolymer transport protein; overlaps another CDS with the same product name. (155 aa)    
Predicted Functional Partners:
tolQ
Biopolymer transport protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.996
EME71049.1
TonB-system energizer ExbB type-1; COG0811 Biopolymer transport proteins.
 
 
 0.984
EME68165.1
Periplasmic protein TonB; Links inner and outer membranes.
  
 
 0.965
EME70255.1
COG0811 Biopolymer transport proteins; overlaps another CDS with the same product name.
 
 
 0.944
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.934
pal
Outer membrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.858
EME71051.1
Protein TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.854
EME70254.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.841
EME69503.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.840
EME68307.1
Periplasmic protein TonB.
  
 
 0.828
Your Current Organism:
Magnetospirillum caucaseum
NCBI taxonomy Id: 1244869
Other names: DSM 28995, M. caucaseum, Magnetospirillum caucaseum Dziuba et al. 2016, Magnetospirillum sp. SO-1, VKM B-2936, strain SO-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.