STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EME68086.1Cytochrome c-type biogenesis protein CcmF; COG1138 Cytochrome c biogenesis factor. (339 aa)    
Predicted Functional Partners:
EME71614.1
COG0526 Thiol-disulfide isomerase and thioredoxins.
 
  
 0.963
EME71616.1
Cytochrome c-type biogenesis protein cycH; COG4235 Cytochrome c biogenesis factor.
 
 
 0.953
EME71615.1
Cytochrome c-type biogenesis protein cycL precursor; Possible subunit of a heme lyase.
 
  
 0.924
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
 
 0.913
ccmC
ABC-type transport system involved in cytochrome c biogenesis, permease component; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
 
  
 0.855
EME71617.1
ABC-type transport system involved in cytochrome c biogenesis, permease component; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
 
  
 0.835
EME70308.1
O-linked N-acetylglucosamine transferase; COG0457 FOG: TPR repeat.
  
 
 0.834
EME68089.1
Quinohemoprotein amine dehydrogenase 40 kDa subunit.
       0.778
EME68087.1
Hypothetical protein; COG1404 Subtilisin-like serine proteases.
       0.773
EME68088.1
2-phenylethylamine uptake protein PeaH; COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.773
Your Current Organism:
Magnetospirillum caucaseum
NCBI taxonomy Id: 1244869
Other names: DSM 28995, M. caucaseum, Magnetospirillum caucaseum Dziuba et al. 2016, Magnetospirillum sp. SO-1, VKM B-2936, strain SO-1
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