STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfd_1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)    
Predicted Functional Partners:
APE76031.1
Amidophosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.901
xpsE
Type II secretory pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.833
comEA
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.738
APE77135.1
DNA internalization-related competence protein ComEC/Rec2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.707
APE76221.1
Competence protein ComGF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.705
dnaI
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.662
dnaD
DNA replication protein DnaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.629
yigZ
YigZ family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.627
APE76218.1
Competence protein ComGC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.604
epsF
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.600
Your Current Organism:
Leuconostoc mesenteroides
NCBI taxonomy Id: 1245
Other names: ATCC 8293, Ascococcus mesenteroides, Betacoccus arabinosaceus, CCUG 30066, CIP 102305, DSM 20343, HAMBI 2347, JCM 6124, L. mesenteroides, LMG 6893, LMG:6893, Leuconostoc sp. 13HN, NBRC 100496, NCDO 523, NCTC 12954, NRRL B-3470, strain 12954
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