Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
nhaK_1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (695 aa)    
Predicted Functional Partners:
ccpA_2
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
APE76248.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.447
APE76249.1
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
APE76250.1
Gluconate:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.419
Your Current Organism:
Leuconostoc mesenteroides
NCBI taxonomy Id: 1245
Other names: ATCC 8293, Ascococcus mesenteroides, Betacoccus arabinosaceus, CCUG 30066, CIP 102305, DSM 20343, HAMBI 2347, JCM 6124, L. mesenteroides, LMG 6893, LMG:6893, Leuconostoc sp. 13HN, NBRC 100496, NCDO 523, NCTC 12954, NRRL B-3470, strain 12954
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