STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pepSPeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)    
Predicted Functional Partners:
APE76270.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
  
 0.548
lyc_1
1,4-beta-N-acetylmuramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
yvaA
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
deaD
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
pepN
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.508
pepO
Endopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.487
pepF1_1
Oligoendopeptidase F; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.439
def2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
  
 0.438
Your Current Organism:
Leuconostoc mesenteroides
NCBI taxonomy Id: 1245
Other names: ATCC 8293, Ascococcus mesenteroides, Betacoccus arabinosaceus, CCUG 30066, CIP 102305, DSM 20343, HAMBI 2347, JCM 6124, L. mesenteroides, LMG 6893, LMG:6893, Leuconostoc sp. 13HN, NBRC 100496, NCDO 523, NCTC 12954, NRRL B-3470, strain 12954
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