Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
nreCDNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)    
Predicted Functional Partners:
degS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
srrA_1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.764
mmpL8
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.641
phoP
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.639
graR
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.600
APE76704.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.591
APE76703.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.581
rsmB
16S rRNA (cytosine(967)-C(5))-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.580
arlR_1
Two-component sensor histidine kinase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.578
graS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.560
Your Current Organism:
Leuconostoc mesenteroides
NCBI taxonomy Id: 1245
Other names: ATCC 8293, Ascococcus mesenteroides, Betacoccus arabinosaceus, CCUG 30066, CIP 102305, DSM 20343, HAMBI 2347, JCM 6124, L. mesenteroides, LMG 6893, LMG:6893, Leuconostoc sp. 13HN, NBRC 100496, NCDO 523, NCTC 12954, NRRL B-3470, strain 12954
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