STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S58_31470Toxin secretion ABC transporter ATP-binding and membrane protein. (708 aa)    
Predicted Functional Partners:
S58_31480
Putative HlyD family secretion protein.
 
 0.971
S58_43530
Putative HlyD family secretion protein.
 
 0.879
S58_60120
Putative HlyD family secretion protein.
 
 0.879
S58_48550
Putative HlyD family secretion protein.
 
 
 0.878
S58_10950
Conserved exported hypothetical protein.
 
  
 0.863
S58_43520
Putative calcium binding hemolysin protein.
 
  
 0.793
S58_60080
Putative calcium binding hemolysin protein.
 
  
 0.793
S58_46080
Putative type I secretion membrane fusion protein, HlyD precursor.
 
 0.770
S58_41120
Putative secretion HlyD family protein.
 
 0.709
S58_39990
Putative secretion protein, HlyD family.
 
 
 0.694
Your Current Organism:
Bradyrhizobium oligotrophicum
NCBI taxonomy Id: 1245469
Other names: Agromonas oligotrophica LMG 10732, Agromonas oligotrophica S58, B. oligotrophicum S58, Bradyrhizobium oligotrophicum S58
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