STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU02155.1Transcriptional regulator, AraC family. (269 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.712
SDU14925.1
Glutamate synthase (NADPH) large subunit.
    
  0.670
SDU02173.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
       0.658
ribB
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
 0.658
SDU02136.1
Solute carrier family 10 (sodium/bile acid cotransporter), member 7.
 
    0.621
SDU02091.1
Hypothetical protein.
       0.413
SDU02114.1
Oligopeptidase A Metallo peptidase. MEROPS family M03A.
       0.413
Your Current Organism:
Pseudomonas guangdongensis
NCBI taxonomy Id: 1245526
Other names: CCTCC AB 2012022, KACC 16606, P. guangdongensis, Pseudomonas guangdongensis Yang et al. 2013, Pseudomonas sp. SgZ-6, strain SgZ-6
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