STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000340985_03730Unannotated protein. (478 aa)    
Predicted Functional Partners:
GCA_000340985_03728
Unannotated protein.
 
 
 0.999
GCA_000340985_03729
Unannotated protein.
 
 
 0.994
GCA_000340985_03735
Unannotated protein.
 
 
 0.932
GCA_000340985_05330
Unannotated protein.
 
 
 0.913
GCA_000340985_05392
Unannotated protein.
 
 
 0.870
GCA_000340985_04573
Unannotated protein.
 
 
 0.834
GCA_000340985_02927
Unannotated protein.
  
   
 0.793
GCA_000340985_05171
Unannotated protein.
 
 
 0.744
GCA_000340985_03734
Unannotated protein.
 
 
 0.565
GCA_000340985_04902
Unannotated protein.
 
 
 0.555
Your Current Organism:
Nocardiopsis valliformis
NCBI taxonomy Id: 1246448
Other names: N. valliformis DSM 45023, Nocardiopsis valliformis DSM 45023, Nocardiopsis valliformis HBUM 20028
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.