PSACC_03697 protein (Paramicrosporidium saccamoebae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PSACC_03697

Uncharacterized protein. (168 aa)

Predicted Functional Partners:

PSACC_00187

0.979

PSACC_00428

0.975

PSACC_01543

0.971

PSACC_01732

0.967

PSACC_01561

0.966

PSACC_02825

0.954

PSACC_01376

0.954

PSACC_00649

0.938

PSACC_02973

0.914

PSACC_03150

0.888

Your Current Organism:

Paramicrosporidium saccamoebae

NCBI taxonomy Id: 1246581
Other names: KSL3, P. saccamoebae, Paramicrosporidium saccamoebae Corsaro et al., 2014, fungal sp. KSL3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PSACC_00187	PSACC_00649	A0A2H9TQJ5	A0A2H9TP80	SANT domain-containing protein.	Chromatin modification-related protein.	0.922
PSACC_00187	PSACC_01376	A0A2H9TQJ5	A0A2H9TM31	SANT domain-containing protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.941
PSACC_00187	PSACC_01543	A0A2H9TQJ5	A0A2H9TLI8	SANT domain-containing protein.	Uncharacterized protein.	0.983
PSACC_00187	PSACC_01561	A0A2H9TQJ5	A0A2H9TLU2	SANT domain-containing protein.	MRG domain-containing protein.	0.960
PSACC_00187	PSACC_01732	A0A2H9TQJ5	A0A2H9TL10	SANT domain-containing protein.	Chromatin modification-related protein.	0.940
PSACC_00187	PSACC_02825	A0A2H9TQJ5	A0A2H9THY2	SANT domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.993
PSACC_00187	PSACC_02973	A0A2H9TQJ5	A0A2H9THL6	SANT domain-containing protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.870
PSACC_00187	PSACC_03150	A0A2H9TQJ5	A0A2H9TGX4	SANT domain-containing protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.870
PSACC_00187	PSACC_03697	A0A2H9TQJ5	A0A2H9TFZ7	SANT domain-containing protein.	Uncharacterized protein.	0.979
PSACC_00428	PSACC_00649	A0A2H9TPT9	A0A2H9TP80	Uncharacterized protein.	Chromatin modification-related protein.	0.823
PSACC_00428	PSACC_01376	A0A2H9TPT9	A0A2H9TM31	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.875
PSACC_00428	PSACC_01732	A0A2H9TPT9	A0A2H9TL10	Uncharacterized protein.	Chromatin modification-related protein.	0.823
PSACC_00428	PSACC_02825	A0A2H9TPT9	A0A2H9THY2	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.477
PSACC_00428	PSACC_02973	A0A2H9TPT9	A0A2H9THL6	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.879
PSACC_00428	PSACC_03150	A0A2H9TPT9	A0A2H9TGX4	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.875
PSACC_00428	PSACC_03697	A0A2H9TPT9	A0A2H9TFZ7	Uncharacterized protein.	Uncharacterized protein.	0.975
PSACC_00649	PSACC_00187	A0A2H9TP80	A0A2H9TQJ5	Chromatin modification-related protein.	SANT domain-containing protein.	0.922
PSACC_00649	PSACC_00428	A0A2H9TP80	A0A2H9TPT9	Chromatin modification-related protein.	Uncharacterized protein.	0.823
PSACC_00649	PSACC_01376	A0A2H9TP80	A0A2H9TM31	Chromatin modification-related protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.784
PSACC_00649	PSACC_01543	A0A2H9TP80	A0A2H9TLI8	Chromatin modification-related protein.	Uncharacterized protein.	0.903