STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSACC_02022FCP1 homology domain-containing protein. (235 aa)    
Predicted Functional Partners:
PSACC_03590
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.807
PSACC_02682
LNS2 domain-containing protein.
    
 0.774
PSACC_00763
Tim17 domain-containing protein.
    
 0.756
PSACC_01093
RxLR-like protein.
    
 0.736
PSACC_00035
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.736
PSACC_02551
Uncharacterized protein.
   
 0.728
PSACC_00218
TFIIF_beta domain-containing protein.
    
 0.698
PSACC_01074
DNA-directed RNA polymerase II subunit RPB4.
    
 0.697
PSACC_01754
Uncharacterized protein.
   
 0.683
PSACC_01602
Subunit common to RNA polymerases I, II, and.
   
 0.682
Your Current Organism:
Paramicrosporidium saccamoebae
NCBI taxonomy Id: 1246581
Other names: KSL3, P. saccamoebae, Paramicrosporidium saccamoebae Corsaro et al., 2014, fungal sp. KSL3
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