STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSACC_01315Ubiquitin-protein ligase RMD5. (274 aa)    
Predicted Functional Partners:
PSACC_02974
Uncharacterized protein.
  
 
 
 0.964
PSACC_00808
B30.2/SPRY domain-containing protein.
   
 
 0.948
PSACC_03702
Uncharacterized protein.
   
 
 0.938
PSACC_03538
CTLH domain-containing protein.
   
 
 0.868
PSACC_03549
Uncharacterized protein.
    
 
 0.819
PSACC_01551
Glucose-induced degradation complex subunit VID28.
    
 
 0.777
PSACC_02688
Uncharacterized protein.
    
 
 0.681
PSACC_00026
Glucose-induced degradation complex subunit FYV10.
    
 
0.518
PSACC_03394
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 
 0.504
Your Current Organism:
Paramicrosporidium saccamoebae
NCBI taxonomy Id: 1246581
Other names: KSL3, P. saccamoebae, Paramicrosporidium saccamoebae Corsaro et al., 2014, fungal sp. KSL3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.