STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdrAHdrA4. (1217 aa)    
Predicted Functional Partners:
hdrD2
HdrD2'.
 
 0.985
mvhD
F420-non-reducing hydrogenase iron-sulfur subunit D.
 0.983
hdrD
HdrD2.
 
 0.974
fdhB
FdhB6.
 
  
  0.959
SLM30265.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.947
qmoB
QmoB.
 
0.945
SLM33025.1
Putative fusion protein GlcF/heterodisulfide reductase HdrA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.943
SLM30294.1
F420-non-reducing hydrogenase vhc iron-sulfur subunit D (fragment).
 0.931
vhuD
F420-non-reducing hydrogenase vhu iron-sulfur subunit D.
 
 0.928
mvhD-2
F420-non-reducing hydrogenase iron-sulfur subunit D.
 0.928
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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