STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM28732.1Helix-turn-helix protein, CopG. (86 aa)    
Predicted Functional Partners:
SLM28731.1
Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.
  
 
 0.946
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.796
SLM27938.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.759
mazF
MazF; Toxic component of a type II toxin-antitoxin (TA) system.
  
 
 0.759
SLM29867.1
Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.
  
 
 0.759
SLM30823.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.759
SLM31189.1
Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.
  
 
 0.759
mazF-2
mRNA interferase MazF; Toxic component of a type II toxin-antitoxin (TA) system.
  
 
 0.759
SLM31857.1
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.759
SLM32499.1
Transcriptional modulator of MazE/toxin, MazF.
  
 
 0.759
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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