STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM28897.1Related to efflux pump antibiotic resistance protein. (486 aa)    
Predicted Functional Partners:
SLM32658.1
Von Willebrand factor type A.
  
  
 0.650
SLM32920.1
Extracellular solute-binding protein, family 1.
  
  
 0.650
SLM28895.1
Putative membrane-fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.632
SLM28896.1
Outer membrane efflux protein.
     
 0.631
SLM28894.1
Cobalt-zinc-cadmium resistance protein CzcA-like protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.619
oxlT
Major facilitator superfamily, general substrate transporter, oxalate/formate transporter; Function of strongly homologous gene; transporter.
  
 
 0.611
tyrA
T-protein (Includes: Chorismate mutase; Prephenate dehydrogenase).
   
 
 0.585
SLM28414.1
Putative (Acyl-carrier-protein) S-malonyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.557
SLM27865.1
Putative drug resistance permease (EmrB/QacA-family protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
0.554
pheA
PheA.
   
 
 0.530
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.