STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLM28956.1Hypothetical protein; No homology to any previously reported sequences; Belongs to the eIF-2B alpha/beta/delta subunits family. (295 aa)    
Predicted Functional Partners:
SLM28957.1
Citrate transporter family protein.
 
     0.906
fucA
L-fuculose phosphate aldolase.
  
 
 0.797
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
   0.709
punA
Purine nucleoside phosphorylase 1; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
 
 0.672
SLM31944.1
Methylenetetrahydrofolate reductase.
  
  
 0.617
SLM28803.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.574
SLM30296.1
F420-non-reducing hydrogenase, beta subunit, MvhB.
  
     0.573
SLM29041.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the P-Pant transferase superfamily.
  
     0.562
ribE
6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase); Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
    0.558
SLM32671.1
Putative purine nucleoside phosphorylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
  0.554
Your Current Organism:
Desulfamplus magnetovallimortis
NCBI taxonomy Id: 1246637
Other names: Candidatus Desulfamplus magnetomortis, D. magnetovallimortis, DSM 103535, Desulfamplus magnetomortis, JCM 18010, strain BW-1
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